{
"application": "Michigan Imputation Server (Experimental Mode) (Minimac3 1.0.13 - Cloudgene 1.13.0)",
"applicationId": "minimac-admin",
"deletedOn": -1,
"endTime": 1462020562930,
"executionTime": 86610091,
"id": "job-20160429-084540",
"logs": "logs/job-20160429-084540",
"name": "job-20160429-084540",
"positionInQueue": 0,
"running": false,
"startTime": 1461933952839,
"state":,
"outputParams": [{
"description": "Quality-Control Results",
"files": [{
"count": 10,
"hash": "784c0243396e23221a8eb6d7efbad906",
"name": "qcreport.html",
"parameterId": 201692,
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"size": "17 KB",
"username": "admin"
}],
"format": "",
"id": 201692,
"input": false,
"name": "qcreport",
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}, {
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"steps": [{
"id": 38445,
"logMessages": [{
"message": "File Import successful. ",
"time": 1462020565636,
"type": 0
}, {
"message": "1 valid VCF file(s) found.\n\nSamples: 10080\nChromosomes: 20\nSNPs: 17220\nChunks: 7\nDatatype: phased\nReference Panel: hrc.r1.1.2016\nPhasing: eagle",
"time": 1462020565636,
"type": 0
}],
"name": "Input Validation",
"up": null
}, {
"id": 38446,
"logMessages": [{
"message": "Execution successful.",
"time": 1462020565636,
"type": 0
}, {
"message": "<b>Statistics:<\/b> <br>Alternative allele frequency > 0.5 sites: 4,443<br>Reference Overlap: 100.00% <br>Match: 16,621<br>Allele switch: 0<br>Strand flip: 0<br>Strand flip and allele switch: 0<br>A/T, C/G genotypes: 0<br><b>Filtered sites:<\/b> <br>Filter flag set: 0<br>Invalid alleles: 0<br>Duplicated sites: 0<br>NonSNP sites: 0<br>Monomorphic sites: 564<br>Allele mismatch: 35<br>SNPs call rate < 90%: 0",
"time": 1462020565636,
"type": 0
}, {
"message": "Excluded sites in total: 599<br>Remaining sites in total: 16,621<br>",
"time": 1462020565636,
"type": 2
}],
"name": "Quality Control",
"up": null
}, {
"id": 38447,
"logMessages": [{
"message": "Execution successful.",
"time": 1462020565636,
"type": 0
}],
"name": "Quality Control (Report)",
"up": null
}, {
"id": 38448,
"logMessages": [{
"message": "<span class=\"badge badge-success\" style=\"width: 40px\">Chr 20<\/span><br><br><span class=\"badge\" style=\"width: 8px\"> <\/span> Waiting<br><span class=\"badge badge-info\" style=\"width: 8px\"> <\/span> Running<br><span class=\"badge badge-success\" style=\"width: 8px\"> <\/span> Complete",
"time": 1462020565636,
"type": 0
}],
"name": "Pre-phasing and Imputation",
"up": null
}, {
"id": 38449,
"logMessages": [{
"message": "Execution successful.",
"time": 1462020565645,
"type": 0
}],
"name": "Imputation (Report)",
"up": null
}, {
"id": 38450,
"logMessages": [{
"message": "Exported data.",
"time": 1462020565655,
"type": 0
}, {
"message": "We have sent an email to <b>sebastian.schoenherr@uibk.ac.at<\/b> with the password.",
"time": 1462020565655,
"type": 0
}],
"name": "Data Compression and Encryption",
"up": null
}]
}